PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G162800.3
Common NamePHAVU_007G162800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 263aa    MW: 28925.7 Da    PI: 8.6646
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G162800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.6e-143377147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
  Phvul.007G162800.3 33 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 77
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-182783IPR009057Homeodomain-like
PROSITE profilePS5129416.2912882IPR017930Myb domain
TIGRFAMsTIGR015577.2E-193180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-73183IPR009057Homeodomain-like
SMARTSM007171.1E-113280IPR001005SANT/Myb domain
PfamPF002495.8E-123377IPR001005SANT/Myb domain
CDDcd001671.55E-93578No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNSNTSISQS LTAAASDASG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED  60
FVGSKTVIQI RSHAQKYFLK VQKNGTVAHV PPPRPKRKAA HPYPQKASKN VLVPLPASIG  120
YASSTNMLAH GFAAWDETSL LMNIGASKSL TCQDEPNNLC GNEADIGSKG TTQITNSTLS  180
GVRNSTRSLP TSEIPKQGKQ APVLHGLPDF AEVYSFIGSV FDPDTNDHIQ RLKEMDPINF  240
ETVLLLMRNL TVNLSSPDFE PI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144521.10.0hypothetical protein PHAVU_007G162800g
SwissprotQ8RWU31e-128RVE8_ARATH; Protein REVEILLE 8
TrEMBLV7BG080.0V7BG08_PHAVU; Uncharacterized protein
STRINGGLYMA10G05560.11e-172(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-113MYB_related family protein