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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G162800.3 | ||||||||
Common Name | PHAVU_007G162800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB_related | ||||||||
Protein Properties | Length: 263aa MW: 28925.7 Da PI: 8.6646 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.6e-14 | 33 | 77 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky Phvul.007G162800.3 33 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 77 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 28 | 82 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.2E-19 | 31 | 80 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 31 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 32 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-12 | 33 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-9 | 35 | 78 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0032922 | Biological Process | circadian regulation of gene expression | ||||
GO:0043966 | Biological Process | histone H3 acetylation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MNSNTSISQS LTAAASDASG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED 60 FVGSKTVIQI RSHAQKYFLK VQKNGTVAHV PPPRPKRKAA HPYPQKASKN VLVPLPASIG 120 YASSTNMLAH GFAAWDETSL LMNIGASKSL TCQDEPNNLC GNEADIGSKG TTQITNSTLS 180 GVRNSTRSLP TSEIPKQGKQ APVLHGLPDF AEVYSFIGSV FDPDTNDHIQ RLKEMDPINF 240 ETVLLLMRNL TVNLSSPDFE PI* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00338 | DAP | Transfer from AT3G09600 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144521.1 | 0.0 | hypothetical protein PHAVU_007G162800g | ||||
Swissprot | Q8RWU3 | 1e-128 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | V7BG08 | 0.0 | V7BG08_PHAVU; Uncharacterized protein | ||||
STRING | GLYMA10G05560.1 | 1e-172 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-113 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G162800.3 |
Entrez Gene | 18626080 |